- Home
- Search Results
- Page 1 of 1
Search for: All records
- 
                                    Total Resources2
- Resource Type
- 
                                    
                                    
                                    
                                    0001000001000000
- More
- Availability
- 
                                    
                                    20
- Author / Contributor
- Filter by Author / Creator
- 
                                    
                                        - 
                                                    
                                                        
                                                            
                                                            Wu, Yuhan (2)
- 
                                                    
                                                        
                                                            
                                                            Chen, Peiqing (1)
- 
                                                    
                                                        
                                                            
                                                            Dartawan, Ricky (1)
- 
                                                    
                                                        
                                                            
                                                            Hu, Ashley (1)
- 
                                                    
                                                        
                                                            
                                                            Jiang, Junchen (1)
- 
                                                    
                                                        
                                                            
                                                            Liu, Zaoxing (1)
- 
                                                    
                                                        
                                                            
                                                            Lu, Jeanne (1)
- 
                                                    
                                                        
                                                            
                                                            Sheng, Jia (1)
- 
                                                    
                                                        
                                                            
                                                            Vangaveti, Sweta (1)
- 
                                                    
                                                        
                                                            
                                                            Wu, Chengze (1)
- 
                                                    
                                                        
                                                            
                                                            Yang, Tong (1)
- 
                                                    
                                                        
                                                            
                                                            Zhang, Hope (1)
- 
                                                    
                                                        
                                                            
                                                            Zheng, Ya Ying (1)
- 
                                                    
                                                        
                                                            
                                                            #Tyler Phillips, Kenneth E. (0)
- 
                                                    
                                                        
                                                            
                                                            #Willis, Ciara (0)
- 
                                                    
                                                        
                                                            
                                                            & Abreu-Ramos, E. D. (0)
- 
                                                    
                                                        
                                                            
                                                            & Abramson, C. I. (0)
- 
                                                    
                                                        
                                                            
                                                            & Abreu-Ramos, E. D. (0)
- 
                                                    
                                                        
                                                            
                                                            & Adams, S.G. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ahmed, K. (0)
 
- 
                                                    
                                                        
                                                            
                                                            
- Filter by Editor
- 
                                    
                                        - 
                                                    
                                                        
                                                            
                                                            & Spizer, S. M. (0)
- 
                                                    
                                                        
                                                            
                                                            & . Spizer, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ahn, J. (0)
- 
                                                    
                                                        
                                                            
                                                            & Bateiha, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Bosch, N. (0)
- 
                                                    
                                                        
                                                            
                                                            & Brennan K. (0)
- 
                                                    
                                                        
                                                            
                                                            & Brennan, K. (0)
- 
                                                    
                                                        
                                                            
                                                            & Chen, B. (0)
- 
                                                    
                                                        
                                                            
                                                            & Chen, Bodong (0)
- 
                                                    
                                                        
                                                            
                                                            & Drown, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ferretti, F. (0)
- 
                                                    
                                                        
                                                            
                                                            & Higgins, A. (0)
- 
                                                    
                                                        
                                                            
                                                            & J. Peters (0)
- 
                                                    
                                                        
                                                            
                                                            & Kali, Y. (0)
- 
                                                    
                                                        
                                                            
                                                            & Ruiz-Arias, P.M. (0)
- 
                                                    
                                                        
                                                            
                                                            & S. Spitzer (0)
- 
                                                    
                                                        
                                                            
                                                            & Sahin. I. (0)
- 
                                                    
                                                        
                                                            
                                                            & Spitzer, S. (0)
- 
                                                    
                                                        
                                                            
                                                            & Spitzer, S.M. (0)
- 
                                                    
                                                        
                                                            
                                                            (submitted - in Review for IEEE ICASSP-2024) (0)
 
- 
                                                    
                                                        
                                                            
                                                            
- 
                                    Have feedback or suggestions for a way to improve these results?
 !
                                    
                                        
                                            Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher.
                                            Some full text articles may not yet be available without a charge during the embargo (administrative interval).
                                        
                                        
                                        
                                            
                                                
                                             What is a DOI Number?
                                        
                                    
                                
Some links on this page may take you to non-federal websites. Their policies may differ from this site.
- 
            The telomeric DNA, a distal region of eukaryotic chromosome containing guanine-rich repetitive sequence of (TTAGGG)n, has been shown to adopt higher-order structures, specifically G-quadruplexes (G4s). Previous studies have demonstrated the implication of G4 in tumor inhibition through chromosome maintenance and manipulation of oncogene expression featuring their G-rich promoter regions. Besides higher order structures, several regulatory roles are attributed to DNA epigenetic markers. In this work, we investigated how the structural dynamics of a G-quadruplex, formed by the telomeric sequence, is affected by inosine, a prevalent modified nucleotide. We used the standard (TTAGGG)ntelomere repeats with guanosine mutated to inosine at each G position. Sequences (GGG)4, (IGG)4, (GIG)4, (GGI)4, (IGI)4, (IIG)4, (GII)4,and (III)4, bridged by TTA linker, are studied using biophysical experiments and molecular modeling. The effects of metal cations in quadruplex folding were explored in both Na+and K+containing buffers using CD and UV-melting studies. Our results show that antiparallel quadruplex topology forms with the native sequence (GGG)4and the terminal modified DNAs (IGG)4and (GGI)4in both Na+and K+containing buffers. Specifically, quadruplex hybrid was observed for (GGG)4in K+buffer. Among the other modified sequences, (GIG)4, (IGI)4and (GII)4show parallel features, while (IIG)4and (III)4show no detectable conformation in the presence of either Na+or K+. Our studies indicate that terminal lesions (IGG)4and (GGI)4may induce certain unknown conformations. The folding dynamics become undetectable in the presence of more than one inosine substitution except (IGI)4in both buffer ions. In addition, both UV melting and CD melting studies implied that in most cases the K+cation confers more thermodynamic stability compared to Na+. Collectively, our conformational studies revealed the diverse structural polymorphisms of G4 with position dependent G-to-I mutations in different ion conditions.more » « less
- 
            Chen, Peiqing; Wu, Yuhan; Yang, Tong; Jiang, Junchen; Liu, Zaoxing (, Proceedings of the 21st ACM Internet Measurement Conference (IMC '21))As a class of approximate measurement approaches, sketching algorithms have significantly improved the estimation of network flow information using limited resources. While these algorithms enjoy sound error-bound analysis under worst-case scenarios, their actual errors can vary significantly with the incoming flow distribution, making their traditional error bounds too "loose" to be useful in practice. In this paper, we propose a simple yet rigorous error estimation method to more precisely analyze the errors for posterior sketch queries by leveraging the knowledge from the sketch counters. This approach will enable network operators to understand how accurate the current measurements are and make appropriate decisions accordingly (e.g., identify potential heavy users or answer "what-if" questions to better provision resources). Theoretical analysis and trace-driven experiments show that our estimated bounds on sketch errors are much tighter than previous ones and match the actual error bounds in most cases.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
